CMake project code model messed up

I have a CMake project with several targets defined in extarnal CMake files and attached with CMake's add_subdirectory command.
Qt-creator 3.2 correctly listed and parsed all project files.
However, version 3.3 cannot find most of #include-d files. It seems, that is completely disregards CMake's include_directories and target_include_directories commands during includes search. As result, it sees only includes relative to current file, which is of course not always the case in most of real world projects.
Code model dialog also displays strange data. Target names on the Project Parts page are mostly unrelated to files they list below. They are either incomplete or list files from other libraries.
Btw, v 3.2 showed only 1 project part for the same project, which may be not strictly correct, but at least it navigated the code very well.

Please, fix. This just kills the IDE.