init-repository fails to check out some modules

qtrob@RightOn:~/dev/g++-6.2.0/qt-5.6.3-pre$ nice /home/qtrob/dev/src/qt-5.6.3-pre/configure -developer-build -skip webchannel -opensource -nomake examples -nomake tests -confirm-license -no-gtkstyle > configure.log 2>&1 && nice make -j15 > build.log 2>&1 && echo success
success

qtrob@RightOn:~/dev/g++-6.2.0/qt-5.6.3-pre$ ls qtbase/bin/
canbusutil  moc  qdbuscpp2xml  qdbusxml2cpp  qlalr  qmake  qt.conf  rcc  uic

qtrob@RightOn:~/dev/g++-6.2.0/qt-5.6.3-pre$ ls qtbase/lib/ | grep 5.6.2
libQt5Concurrent.so.5.6.2
libQt5Core.so.5.6.2
libQt5DBus.so.5.6.2
libQt5EglDeviceIntegration.so.5.6.2
libQt5Gui.so.5.6.2
libQt5Network.so.5.6.2
libQt5OpenGL.so.5.6.2
libQt5PrintSupport.so.5.6.2
libQt5Sensors.so.5.6.2
libQt5SerialBus.so.5.6.2
libQt5SerialPort.so.5.6.2
libQt5Sql.so.5.6.2
libQt5Test.so.5.6.2
libQt5WebSockets.so.5.6.2
libQt5Widgets.so.5.6.2
libQt5X11Extras.so.5.6.2
libQt5XcbQpa.so.5.6.2
libQt5Xml.so.5.6.2